7ae96b6b-0a64-4479-9fa1-8ba6526e2c87

Committed 20 Mar 2024 12:42PM UTC coverage: 30.068% (-66.2%) from 96.266%

Build # 7ae96b6b-0a64-4479-9fa1-8ba6526e2c87

Build Type

Pull #1701

circleci

Committed by

leefaisonr

Commit Message

makes it so that links open in new window

Pull Request Pull Request #1701: Update language on submission form

Run Details

1019 of 3389 relevant lines covered (30.07%)

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20.39

/app/controllers/works_controller.rb

# frozen_string_literal: true

require "nokogiri"
require "open-uri"

# rubocop:disable Metrics/ClassLength
class WorksController < ApplicationController
  include ERB::Util
  around_action :rescue_aasm_error, only: [:approve, :withdraw, :resubmit, :validate, :create, :new_submission]

  skip_before_action :authenticate_user!
  before_action :authenticate_user!, unless: :public_request?

  def index
    @works = Work.all
    respond_to do |format|
      format.html
      format.rss { render layout: false }
    end
  end

  # Renders the "step 0" information page before creating a new dataset
  def new
    group = Group.find_by(code: params[:group_code]) || current_user.default_group
    @work = Work.new(created_by_user_id: current_user.id, group:)
    @work_decorator = WorkDecorator.new(@work, current_user)
    @form_resource_decorator = FormResourceDecorator.new(@work, current_user)
    if wizard_mode?
      render "new_submission"
    end
  end

  def create
    @work = Work.new(created_by_user_id: current_user.id, group_id: params_group_id, user_entered_doi: params["doi"].present?)
    @work.resource = FormToResourceService.convert(params, @work)
    @work.resource.migrated = migrated?
    if @work.valid?
      @work.draft!(current_user)
      upload_service = WorkUploadsEditService.new(@work, current_user)
      upload_service.update_precurated_file_list(added_files_param, deleted_files_param)
      redirect_to work_url(@work), notice: "Work was successfully created."
    else
      @work_decorator = WorkDecorator.new(@work, current_user)
      @form_resource_decorator = FormResourceDecorator.new(@work, current_user)
      render :new, status: :unprocessable_entity
    end
  end

  # Creates the new dataset
  def new_submission
    default_group_id = current_user.default_group.id
    @work = Work.new(created_by_user_id: current_user.id, group_id: default_group_id)
    @work.resource = FormToResourceService.convert(params, @work)
    @work.draft!(current_user)
    redirect_to edit_work_path(@work, wizard: true)
  end

  ##
  # Show the information for the dataset with the given id
  # When requested as .json, return the internal json resource
  def show
    @work = Work.find(params[:id])
    UpdateSnapshotJob.perform_later(work_id: @work.id, last_snapshot_id: work.upload_snapshots.first&.id)
    @work_decorator = WorkDecorator.new(@work, current_user)

    respond_to do |format|
      format.html do
        # Ensure that the Work belongs to a Group
        group = @work_decorator.group
        raise(Work::InvalidGroupError, "The Work #{@work.id} does not belong to any Group") unless group

        @can_curate = current_user.can_admin?(group)
        @work.mark_new_notifications_as_read(current_user.id)
      end
      format.json { render json: @work.to_json }
    end
  end

  def file_list
    if params[:id] == "NONE"
      # This is a special case when we render the file list for a work being created
      # (i.e. it does not have an id just yet)
      render json: []
    else
      @work = Work.find(params[:id])
      render json: @work.file_list
    end
  end

  def resolve_doi
    @work = Work.find_by_doi(params[:doi])
    redirect_to @work
  end

  def resolve_ark
    @work = Work.find_by_ark(params[:ark])
    redirect_to @work
  end

  # GET /works/1/edit
  # rubocop:disable Metrics/MethodLength
  def edit
    @work = Work.find(params[:id])
    @work_decorator = WorkDecorator.new(@work, current_user)
    if current_user && @work.editable_by?(current_user)
      if @work.approved? && !@work.administered_by?(current_user)
        Honeybadger.notify("Can not edit work: #{@work.id} is approved but #{current_user.uid} is not admin")
        redirect_to root_path, notice: I18n.t("works.uneditable.approved")
      else
        @uploads = @work.uploads
        @wizard_mode = wizard_mode?
        @form_resource_decorator = FormResourceDecorator.new(@work, current_user)
        render "edit"
      end
    else
      Honeybadger.notify("Can not edit work: #{@work.id} is not editable by #{current_user.uid}")
      redirect_to root_path, notice: I18n.t("works.uneditable.privs")
    end
  end
  # rubocop:enable Metrics/MethodLength

  def update
    @work = Work.find(params[:id])
    if current_user.blank? || !@work.editable_by?(current_user)
      Honeybadger.notify("Can not update work: #{@work.id} is not editable by #{current_user.uid}")
      redirect_to root_path, notice: I18n.t("works.uneditable.privs")
    elsif !@work.editable_in_current_state?(current_user)
      Honeybadger.notify("Can not update work: #{@work.id} is not editable in current state by #{current_user.uid}")
      redirect_to root_path, notice: I18n.t("works.uneditable.approved")
    else
      update_work
    end
  end

  # Prompt to select how to submit their files
  def attachment_select
    @work = Work.find(params[:id])
    @wizard_mode = true
  end

  # User selected a specific way to submit their files
  def attachment_selected
    @work = Work.find(params[:id])
    @wizard_mode = true
    @work.files_location = params["attachment_type"]
    @work.save!

    # create a directory for the work if the curator will need to move files by hand
    @work.s3_query_service.create_directory if @work.files_location != "file_upload"

    next_url = case @work.files_location
               when "file_upload"
                 work_file_upload_url(@work)
               when "file_cluster"
                 work_file_cluster_url(@work)
               else
                 work_file_other_url(@work)
               end
    redirect_to next_url
  end

  # Allow user to upload files directly
  def file_upload
    @work = Work.find(params[:id])
  end

  def file_uploaded
    @work = Work.find(params[:id])
    files = pre_curation_uploads_param || []
    if files.count > 0
      upload_service = WorkUploadsEditService.new(@work, current_user)
      @work = upload_service.update_precurated_file_list(files, [])
      @work.save!
      @work.reload_snapshots
    end
    redirect_to(work_review_path)
  rescue StandardError => active_storage_error
    Rails.logger.error("Failed to attach the file uploads for the work #{@work.doi}: #{active_storage_error}")
    flash[:notice] = "Failed to attach the file uploads for the work #{@work.doi}: #{active_storage_error}. Please contact rdss@princeton.edu for assistance."

    redirect_to work_file_upload_path(@work)
  end

  # Allow user to indicate where their files are located in the PUL Research Cluster
  def file_cluster
    @work = Work.find(params[:id])
  end

  # Allow user to indicate where their files are located in the WWW
  def file_other
    @work = Work.find(params[:id])
  end

  def review
    @work = Work.find(params[:id])
    if request.method == "POST"
      @work.location_notes = params["location_notes"]
      @work.save!
    end
  end

  def validate
    @work = Work.find(params[:id])
    @work.submission_notes = params["submission_notes"]
    @uploads = @work.uploads
    @wizard_mode = true
    @work.complete_submission!(current_user)
    redirect_to user_url(current_user)
  end

  def approve
    @work = Work.find(params[:id])
    @work.approve!(current_user)
    flash[:notice] = "Your files are being moved to the post-curation bucket in the background. Depending on the file sizes this may take some time."
    redirect_to work_path(@work)
  end

  def withdraw
    @work = Work.find(params[:id])
    @work.withdraw!(current_user)
    redirect_to work_path(@work)
  end

  def resubmit
    @work = Work.find(params[:id])
    @work.resubmit!(current_user)
    redirect_to work_path(@work)
  end

  def assign_curator
    work = Work.find(params[:id])
    work.change_curator(params[:uid], current_user)
    if work.errors.count > 0
      render json: { errors: work.errors.map(&:type) }, status: :bad_request
    else
      render json: {}
    end
  rescue => ex
    Rails.logger.error("Error changing curator for work: #{work.id}. Exception: #{ex.message}")
    render json: { errors: ["Cannot save dataset"] }, status: :bad_request
  end

  def add_message
    work = Work.find(params[:id])
    if params["new-message"].present?
      new_message_param = params["new-message"]
      sanitized_new_message = html_escape(new_message_param)

      work.add_message(sanitized_new_message, current_user.id)
    end
    redirect_to work_path(id: params[:id])
  end

  def add_provenance_note
    work = Work.find(params[:id])
    if params["new-provenance-note"].present?
      new_date = params["new-provenance-date"]
      new_label = params["change_label"]
      new_note = html_escape(params["new-provenance-note"])

      work.add_provenance_note(new_date, new_note, current_user.id, new_label)
    end
    redirect_to work_path(id: params[:id])
  end

  # Outputs the Datacite XML representation of the work
  def datacite
    work = Work.find(params[:id])
    render xml: work.to_xml
  end

  def datacite_validate
    @errors = []
    @work = Work.find(params[:id])
    validator = WorkValidator.new(@work)
    unless validator.valid_datacite?
      @errors = @work.errors.full_messages
    end
  end

  def readme_select
    @work = Work.find(params[:id])
    readme = Readme.new(@work, current_user)
    @readme = readme.file_name
    @wizard = true
  end

  def readme_uploaded
    @work = Work.find(params[:id])
    @wizard = true
    readme = Readme.new(@work, current_user)
    readme_error = readme.attach(readme_file_param)
    if readme_error.nil?
      redirect_to work_attachment_select_url(@work)
    else
      flash[:notice] = readme_error
      redirect_to work_readme_select_url(@work)
    end
  end

  def migrating?
    return @work.resource.migrated if @work&.resource && !params.key?(:migrate)

    params[:migrate]
  end
  helper_method :migrating?

  def doi_mutable?
    return true unless !@work.nil? && @work.persisted?

    !@work.approved?
  end
  helper_method :doi_mutable?

  # Returns the raw BibTex citation information
  def bibtex
    work = Work.find(params[:id])
    creators = work.resource.creators.map { |creator| "#{creator.family_name}, #{creator.given_name}" }
    citation = DatasetCitation.new(creators, [work.resource.publication_year], work.resource.titles.first.title, work.resource.resource_type, work.resource.publisher, work.resource.doi)
    bibtex = citation.bibtex
    send_data bibtex, filename: "#{citation.bibtex_id}.bibtex", type: "text/plain", disposition: "attachment"
  end

  private

    # Extract the Work ID parameter
    # @return [String]
    def work_id_param
      params[:id]
    end

    # Find the Work requested by ID
    # @return [Work]
    def work
      Work.find(work_id_param)
    end

    # Determine whether or not the request is for the :index action in the RSS
    # response format
    # This is to enable PDC Discovery to index approved content via the RSS feed
    def rss_index_request?
      action_name == "index" && request.format.symbol == :rss
    end

    # Determine whether or not the request is for the :show action in the JSON
    # response format
    # @return [Boolean]
    def json_show_request?
      action_name == "show" && request.format.symbol == :json
    end

    # Determine whether or not the requested Work has been approved
    # @return [Boolean]
    def work_approved?
      work&.state == "approved"
    end

    ##
    # Public requests are requests that do not require authentication.
    # This is to enable PDC Discovery to index approved content via the RSS feed
    # and .json calls to individual works without needing to log in as a user.
    # Note that only approved works can be fetched for indexing.
    def public_request?
      return true if rss_index_request?
      return true if json_show_request? && work_approved?
      false
    end

    def work_params
      params[:work] || {}
    end

    def patch_params
      return {} unless params.key?(:patch)

      params[:patch]
    end

    def pre_curation_uploads_param
      return if patch_params.nil?

      patch_params[:pre_curation_uploads]
    end

    def readme_file_param
      return if patch_params.nil?

      patch_params[:readme_file]
    end

    # rubocop:disable Metrics/AbcSize
    # rubocop:disable Metrics/BlockNesting
    # rubocop:disable Metrics/CyclomaticComplexity
    # rubocop:disable Metrics/MethodLength
    # rubocop:disable Metrics/PerceivedComplexity
    def rescue_aasm_error
      yield
    rescue AASM::InvalidTransition => error
      message = error.message
      if @work.errors.count > 0
        message = @work.errors.to_a.join(", ")
      end
      message.chop! if message.last == "."
      Honeybadger.notify("Invalid #{@work.current_transition}: #{error.message} errors: #{message}")
      transition_error_message = "We apologize, the following errors were encountered: #{message}. Please contact the PDC Describe administrators for any assistance."
      @errors = [transition_error_message]

      if @work.persisted?
        redirect_to edit_work_url(id: @work.id), notice: transition_error_message, params:
      else
        new_params = {}
        new_params[:wizard] = wizard_mode? if wizard_mode?
        new_params[:migrate] = migrating? if migrating?
        @form_resource_decorator = FormResourceDecorator.new(@work, current_user)
        redirect_to new_work_url(params: new_params), notice: transition_error_message, params: new_params
      end
    rescue StandardError => generic_error
      if action_name == "create"
        if @work.persisted?
          Honeybadger.notify("Failed to create the new Dataset #{@work.id}: #{generic_error.message}")
          @form_resource_decorator = FormResourceDecorator.new(@work, current_user)
          redirect_to edit_work_url(id: @work.id), notice: "Failed to create the new Dataset #{@work.id}: #{generic_error.message}", params:
        else
          Honeybadger.notify("Failed to create a new Dataset #{@work.id}: #{generic_error.message}")
          new_params = {}
          new_params[:wizard] = wizard_mode? if wizard_mode?
          new_params[:migrate] = migrating? if migrating?
          @form_resource_decorator = FormResourceDecorator.new(@work, current_user)
          redirect_to new_work_url(params: new_params), notice: "Failed to create a new Dataset: #{generic_error.message}", params: new_params
        end
      else
        redirect_to root_url, notice: "We apologize, an error was encountered: #{generic_error.message}. Please contact the PDC Describe administrators."
      end
    end
    # rubocop:enable Metrics/PerceivedComplexity
    # rubocop:enable Metrics/MethodLength
    # rubocop:enable Metrics/CyclomaticComplexity
    # rubocop:enable Metrics/BlockNesting
    # rubocop:enable Metrics/AbcSize

    def error_action
      @form_resource_decorator = FormResourceDecorator.new(@work, current_user)
      if action_name == "create"
        :new
      elsif action_name == "validate"
        :edit
      elsif action_name == "new_submission"
        :new_submission
      else
        @work_decorator = WorkDecorator.new(@work, current_user)
        :show
      end
    end

    def wizard_mode?
      params[:wizard] == "true"
    end

    def update_work
      @wizard_mode = wizard_mode?
      upload_service = WorkUploadsEditService.new(@work, current_user)
      if @work.approved?
        upload_keys = deleted_files_param || []
        deleted_uploads = upload_service.find_post_curation_uploads(upload_keys:)

        return head(:forbidden) unless deleted_uploads.empty?
      else
        @work = upload_service.update_precurated_file_list(added_files_param, deleted_files_param)
      end

      process_updates
    end

    def embargo_date_param
      params["embargo-date"]
    end

    def embargo_date
      return nil if embargo_date_param.blank?

      Date.parse(embargo_date_param)
    rescue Date::Error
      Rails.logger.error("Failed to parse the embargo date #{embargo_date_param} for Work #{@work.id}")
      nil
    end

    def update_params
      {
        group_id: params_group_id,
        embargo_date:,
        resource: FormToResourceService.convert(params, @work)
      }
    end

    def added_files_param
      Array(work_params[:pre_curation_uploads_added])
    end

    def deleted_files_param
      deleted_count = (work_params["deleted_files_count"] || "0").to_i
      (1..deleted_count).map { |i| work_params["deleted_file_#{i}"] }.select(&:present?)
    end

    def process_updates
      work_before = @work.dup
      if @work.update(update_params)
        work_compare = WorkCompareService.new(work_before, @work)
        @work.log_changes(work_compare, current_user.id)

        if @wizard_mode
          redirect_to work_readme_select_url(@work)
        else
          redirect_to work_url(@work), notice: "Work was successfully updated."
        end
      else
        # This is needed for rendering HTML views with validation errors
        @uploads = @work.uploads
        @wizard_mode = wizard_mode?
        @form_resource_decorator = FormResourceDecorator.new(@work, current_user)

        render :edit, status: :unprocessable_entity
      end
    end

    def params_group_id
      # Do not allow a nil for the group id
      @params_group_id ||= begin
        group_id = params[:group_id]
        if group_id.blank?
          group_id = current_user.default_group.id
          Honeybadger.notify("We got a nil group as part of the parameters #{params} #{request}")
        end
        group_id
      end
    end

    def migrated?
      return false unless params.key?(:submit)

      params[:submit] == "Migrate"
    end
end
# rubocop:enable Metrics/ClassLength

1	# frozen_string_literal: true
2
3	require "nokogiri"	1✔
4	require "open-uri"	1✔
5
6	# rubocop:disable Metrics/ClassLength
7	class WorksController < ApplicationController	1✔
8	include ERB::Util	1✔
9	around_action :rescue_aasm_error, only: [:approve, :withdraw, :resubmit, :validate, :create, :new_submission]	1✔
10
11	skip_before_action :authenticate_user!	1✔
12	before_action :authenticate_user!, unless: :public_request?	1✔
13
14	def index	1✔
15	@works = Work.all	×
16	respond_to do \|format\|	×
17	format.html	×
18	format.rss { render layout: false }	×
19	end
20	end
21
22	# Renders the "step 0" information page before creating a new dataset
23	def new	1✔
24	group = Group.find_by(code: params[:group_code]) \|\| current_user.default_group	×
25	@work = Work.new(created_by_user_id: current_user.id, group:)	×
26	@work_decorator = WorkDecorator.new(@work, current_user)	×
27	@form_resource_decorator = FormResourceDecorator.new(@work, current_user)	×
28	if wizard_mode?	×
29	render "new_submission"	×
30	end
31	end
32
33	def create	1✔
34	@work = Work.new(created_by_user_id: current_user.id, group_id: params_group_id, user_entered_doi: params["doi"].present?)	×
35	@work.resource = FormToResourceService.convert(params, @work)	×
36	@work.resource.migrated = migrated?	×
37	if @work.valid?	×
38	@work.draft!(current_user)	×
39	upload_service = WorkUploadsEditService.new(@work, current_user)	×
40	upload_service.update_precurated_file_list(added_files_param, deleted_files_param)	×
41	redirect_to work_url(@work), notice: "Work was successfully created."	×
42	else
43	@work_decorator = WorkDecorator.new(@work, current_user)	×
44	@form_resource_decorator = FormResourceDecorator.new(@work, current_user)	×
45	render :new, status: :unprocessable_entity	×
46	end
47	end
48
49	# Creates the new dataset
50	def new_submission	1✔
51	default_group_id = current_user.default_group.id	×
52	@work = Work.new(created_by_user_id: current_user.id, group_id: default_group_id)	×
53	@work.resource = FormToResourceService.convert(params, @work)	×
54	@work.draft!(current_user)	×
55	redirect_to edit_work_path(@work, wizard: true)	×
56	end
57
58	##
59	# Show the information for the dataset with the given id
60	# When requested as .json, return the internal json resource
61	def show	1✔
62	@work = Work.find(params[:id])	×
63	UpdateSnapshotJob.perform_later(work_id: @work.id, last_snapshot_id: work.upload_snapshots.first&.id)	×
64	@work_decorator = WorkDecorator.new(@work, current_user)	×
65
66	respond_to do \|format\|	×
67	format.html do	×
68	# Ensure that the Work belongs to a Group
69	group = @work_decorator.group	×
70	raise(Work::InvalidGroupError, "The Work #{@work.id} does not belong to any Group") unless group	×
71
72	@can_curate = current_user.can_admin?(group)	×
73	@work.mark_new_notifications_as_read(current_user.id)	×
74	end
75	format.json { render json: @work.to_json }	×
76	end
77	end
78
79	def file_list	1✔
80	if params[:id] == "NONE"	×
81	# This is a special case when we render the file list for a work being created
82	# (i.e. it does not have an id just yet)
83	render json: []	×
84	else
85	@work = Work.find(params[:id])	×
86	render json: @work.file_list	×
87	end
88	end
89
90	def resolve_doi	1✔
91	@work = Work.find_by_doi(params[:doi])	×
92	redirect_to @work	×
93	end
94
95	def resolve_ark	1✔
96	@work = Work.find_by_ark(params[:ark])	×
97	redirect_to @work	×
98	end
99
100	# GET /works/1/edit
101	# rubocop:disable Metrics/MethodLength
102	def edit	1✔
103	@work = Work.find(params[:id])	×
104	@work_decorator = WorkDecorator.new(@work, current_user)	×
105	if current_user && @work.editable_by?(current_user)	×
106	if @work.approved? && !@work.administered_by?(current_user)	×
107	Honeybadger.notify("Can not edit work: #{@work.id} is approved but #{current_user.uid} is not admin")	×
108	redirect_to root_path, notice: I18n.t("works.uneditable.approved")	×
109	else
110	@uploads = @work.uploads	×
111	@wizard_mode = wizard_mode?	×
112	@form_resource_decorator = FormResourceDecorator.new(@work, current_user)	×
113	render "edit"	×
114	end
115	else
116	Honeybadger.notify("Can not edit work: #{@work.id} is not editable by #{current_user.uid}")	×
117	redirect_to root_path, notice: I18n.t("works.uneditable.privs")	×
118	end
119	end
120	# rubocop:enable Metrics/MethodLength
121
122	def update	1✔
123	@work = Work.find(params[:id])	×
124	if current_user.blank? \|\| !@work.editable_by?(current_user)	×
125	Honeybadger.notify("Can not update work: #{@work.id} is not editable by #{current_user.uid}")	×
126	redirect_to root_path, notice: I18n.t("works.uneditable.privs")	×
127	elsif !@work.editable_in_current_state?(current_user)	×
128	Honeybadger.notify("Can not update work: #{@work.id} is not editable in current state by #{current_user.uid}")	×
129	redirect_to root_path, notice: I18n.t("works.uneditable.approved")	×
130	else
131	update_work	×
132	end
133	end
134
135	# Prompt to select how to submit their files
136	def attachment_select	1✔
137	@work = Work.find(params[:id])	×
138	@wizard_mode = true	×
139	end
140
141	# User selected a specific way to submit their files
142	def attachment_selected	1✔
143	@work = Work.find(params[:id])	×
144	@wizard_mode = true	×
145	@work.files_location = params["attachment_type"]	×
146	@work.save!	×
147
148	# create a directory for the work if the curator will need to move files by hand
149	@work.s3_query_service.create_directory if @work.files_location != "file_upload"	×
150
151	next_url = case @work.files_location	×
152	when "file_upload"
153	work_file_upload_url(@work)	×
154	when "file_cluster"
155	work_file_cluster_url(@work)	×
156	else
157	work_file_other_url(@work)	×
158	end
159	redirect_to next_url	×
160	end
161
162	# Allow user to upload files directly
163	def file_upload	1✔
164	@work = Work.find(params[:id])	×
165	end
166
167	def file_uploaded	1✔
168	@work = Work.find(params[:id])	×
169	files = pre_curation_uploads_param \|\| []	×
170	if files.count > 0	×
171	upload_service = WorkUploadsEditService.new(@work, current_user)	×
172	@work = upload_service.update_precurated_file_list(files, [])	×
173	@work.save!	×
174	@work.reload_snapshots	×
175	end
176	redirect_to(work_review_path)	×
177	rescue StandardError => active_storage_error
178	Rails.logger.error("Failed to attach the file uploads for the work #{@work.doi}: #{active_storage_error}")	×
179	flash[:notice] = "Failed to attach the file uploads for the work #{@work.doi}: #{active_storage_error}. Please contact rdss@princeton.edu for assistance."	×
180
181	redirect_to work_file_upload_path(@work)	×
182	end
183
184	# Allow user to indicate where their files are located in the PUL Research Cluster
185	def file_cluster	1✔
186	@work = Work.find(params[:id])	×
187	end
188
189	# Allow user to indicate where their files are located in the WWW
190	def file_other	1✔
191	@work = Work.find(params[:id])	×
192	end
193
194	def review	1✔
195	@work = Work.find(params[:id])	×
196	if request.method == "POST"	×
197	@work.location_notes = params["location_notes"]	×
198	@work.save!	×
199	end
200	end
201
202	def validate	1✔
203	@work = Work.find(params[:id])	×
204	@work.submission_notes = params["submission_notes"]	×
205	@uploads = @work.uploads	×
206	@wizard_mode = true	×
207	@work.complete_submission!(current_user)	×
208	redirect_to user_url(current_user)	×
209	end
210
211	def approve	1✔
212	@work = Work.find(params[:id])	×
213	@work.approve!(current_user)	×
214	flash[:notice] = "Your files are being moved to the post-curation bucket in the background. Depending on the file sizes this may take some time."	×
215	redirect_to work_path(@work)	×
216	end
217
218	def withdraw	1✔
219	@work = Work.find(params[:id])	×
220	@work.withdraw!(current_user)	×
221	redirect_to work_path(@work)	×
222	end
223
224	def resubmit	1✔
225	@work = Work.find(params[:id])	×
226	@work.resubmit!(current_user)	×
227	redirect_to work_path(@work)	×
228	end
229
230	def assign_curator	1✔
231	work = Work.find(params[:id])	×
232	work.change_curator(params[:uid], current_user)	×
233	if work.errors.count > 0	×
234	render json: { errors: work.errors.map(&:type) }, status: :bad_request	×
235	else
236	render json: {}	×
237	end
238	rescue => ex
239	Rails.logger.error("Error changing curator for work: #{work.id}. Exception: #{ex.message}")	×
240	render json: { errors: ["Cannot save dataset"] }, status: :bad_request	×
241	end
242
243	def add_message	1✔
244	work = Work.find(params[:id])	×
245	if params["new-message"].present?	×
246	new_message_param = params["new-message"]	×
247	sanitized_new_message = html_escape(new_message_param)	×
248
249	work.add_message(sanitized_new_message, current_user.id)	×
250	end
251	redirect_to work_path(id: params[:id])	×
252	end
253
254	def add_provenance_note	1✔
255	work = Work.find(params[:id])	×
256	if params["new-provenance-note"].present?	×
257	new_date = params["new-provenance-date"]	×
258	new_label = params["change_label"]	×
259	new_note = html_escape(params["new-provenance-note"])	×
260
261	work.add_provenance_note(new_date, new_note, current_user.id, new_label)	×
262	end
263	redirect_to work_path(id: params[:id])	×
264	end
265
266	# Outputs the Datacite XML representation of the work
267	def datacite	1✔
268	work = Work.find(params[:id])	×
269	render xml: work.to_xml	×
270	end
271
272	def datacite_validate	1✔
273	@errors = []	×
274	@work = Work.find(params[:id])	×
275	validator = WorkValidator.new(@work)	×
276	unless validator.valid_datacite?	×
277	@errors = @work.errors.full_messages	×
278	end
279	end
280
281	def readme_select	1✔
282	@work = Work.find(params[:id])	×
283	readme = Readme.new(@work, current_user)	×
284	@readme = readme.file_name	×
285	@wizard = true	×
286	end
287
288	def readme_uploaded	1✔
289	@work = Work.find(params[:id])	×
290	@wizard = true	×
291	readme = Readme.new(@work, current_user)	×
292	readme_error = readme.attach(readme_file_param)	×
293	if readme_error.nil?	×
294	redirect_to work_attachment_select_url(@work)	×
295	else
296	flash[:notice] = readme_error	×
297	redirect_to work_readme_select_url(@work)	×
298	end
299	end
300
301	def migrating?	1✔
302	return @work.resource.migrated if @work&.resource && !params.key?(:migrate)	×
303
304	params[:migrate]	×
305	end
306	helper_method :migrating?	1✔
307
308	def doi_mutable?	1✔
309	return true unless !@work.nil? && @work.persisted?	×
310
311	!@work.approved?	×
312	end
313	helper_method :doi_mutable?	1✔
314
315	# Returns the raw BibTex citation information
316	def bibtex	1✔
317	work = Work.find(params[:id])	×
318	creators = work.resource.creators.map { \|creator\| "#{creator.family_name}, #{creator.given_name}" }	×
319	citation = DatasetCitation.new(creators, [work.resource.publication_year], work.resource.titles.first.title, work.resource.resource_type, work.resource.publisher, work.resource.doi)	×
320	bibtex = citation.bibtex	×
321	send_data bibtex, filename: "#{citation.bibtex_id}.bibtex", type: "text/plain", disposition: "attachment"	×
322	end
323
324	private	1✔
325
326	# Extract the Work ID parameter
327	# @return [String]
328	def work_id_param	1✔
329	params[:id]	×
330	end
331
332	# Find the Work requested by ID
333	# @return [Work]
334	def work	1✔
335	Work.find(work_id_param)	×
336	end
337
338	# Determine whether or not the request is for the :index action in the RSS
339	# response format
340	# This is to enable PDC Discovery to index approved content via the RSS feed
341	def rss_index_request?	1✔
342	action_name == "index" && request.format.symbol == :rss	×
343	end
344
345	# Determine whether or not the request is for the :show action in the JSON
346	# response format
347	# @return [Boolean]
348	def json_show_request?	1✔
349	action_name == "show" && request.format.symbol == :json	×
350	end
351
352	# Determine whether or not the requested Work has been approved
353	# @return [Boolean]
354	def work_approved?	1✔
355	work&.state == "approved"	×
356	end
357
358	##
359	# Public requests are requests that do not require authentication.
360	# This is to enable PDC Discovery to index approved content via the RSS feed
361	# and .json calls to individual works without needing to log in as a user.
362	# Note that only approved works can be fetched for indexing.
363	def public_request?	1✔
364	return true if rss_index_request?	×
365	return true if json_show_request? && work_approved?	×
366	false	×
367	end
368
369	def work_params	1✔
370	params[:work] \|\| {}	×
371	end
372
373	def patch_params	1✔
374	return {} unless params.key?(:patch)	×
375
376	params[:patch]	×
377	end
378
379	def pre_curation_uploads_param	1✔
380	return if patch_params.nil?	×
381
382	patch_params[:pre_curation_uploads]	×
383	end
384
385	def readme_file_param	1✔
386	return if patch_params.nil?	×
387
388	patch_params[:readme_file]	×
389	end
390
391	# rubocop:disable Metrics/AbcSize
392	# rubocop:disable Metrics/BlockNesting
393	# rubocop:disable Metrics/CyclomaticComplexity
394	# rubocop:disable Metrics/MethodLength
395	# rubocop:disable Metrics/PerceivedComplexity
396	def rescue_aasm_error	1✔
397	yield	×
398	rescue AASM::InvalidTransition => error
399	message = error.message	×
400	if @work.errors.count > 0	×
401	message = @work.errors.to_a.join(", ")	×
402	end
403	message.chop! if message.last == "."	×
404	Honeybadger.notify("Invalid #{@work.current_transition}: #{error.message} errors: #{message}")	×
405	transition_error_message = "We apologize, the following errors were encountered: #{message}. Please contact the PDC Describe administrators for any assistance."	×
406	@errors = [transition_error_message]	×
407
408	if @work.persisted?	×
409	redirect_to edit_work_url(id: @work.id), notice: transition_error_message, params:	×
410	else
411	new_params = {}	×
412	new_params[:wizard] = wizard_mode? if wizard_mode?	×
413	new_params[:migrate] = migrating? if migrating?	×
414	@form_resource_decorator = FormResourceDecorator.new(@work, current_user)	×
415	redirect_to new_work_url(params: new_params), notice: transition_error_message, params: new_params	×
416	end
417	rescue StandardError => generic_error
418	if action_name == "create"	×
419	if @work.persisted?	×
420	Honeybadger.notify("Failed to create the new Dataset #{@work.id}: #{generic_error.message}")	×
421	@form_resource_decorator = FormResourceDecorator.new(@work, current_user)	×
422	redirect_to edit_work_url(id: @work.id), notice: "Failed to create the new Dataset #{@work.id}: #{generic_error.message}", params:	×
423	else
424	Honeybadger.notify("Failed to create a new Dataset #{@work.id}: #{generic_error.message}")	×
425	new_params = {}	×
426	new_params[:wizard] = wizard_mode? if wizard_mode?	×
427	new_params[:migrate] = migrating? if migrating?	×
428	@form_resource_decorator = FormResourceDecorator.new(@work, current_user)	×
429	redirect_to new_work_url(params: new_params), notice: "Failed to create a new Dataset: #{generic_error.message}", params: new_params	×
430	end
431	else
432	redirect_to root_url, notice: "We apologize, an error was encountered: #{generic_error.message}. Please contact the PDC Describe administrators."	×
433	end
434	end
435	# rubocop:enable Metrics/PerceivedComplexity
436	# rubocop:enable Metrics/MethodLength
437	# rubocop:enable Metrics/CyclomaticComplexity
438	# rubocop:enable Metrics/BlockNesting
439	# rubocop:enable Metrics/AbcSize
440
441	def error_action	1✔
442	@form_resource_decorator = FormResourceDecorator.new(@work, current_user)	×
443	if action_name == "create"	×
444	:new	×
445	elsif action_name == "validate"	×
446	:edit	×
447	elsif action_name == "new_submission"	×
448	:new_submission	×
449	else
450	@work_decorator = WorkDecorator.new(@work, current_user)	×
451	:show	×
452	end
453	end
454
455	def wizard_mode?	1✔
456	params[:wizard] == "true"	×
457	end
458
459	def update_work	1✔
460	@wizard_mode = wizard_mode?	×
461	upload_service = WorkUploadsEditService.new(@work, current_user)	×
462	if @work.approved?	×
463	upload_keys = deleted_files_param \|\| []	×
464	deleted_uploads = upload_service.find_post_curation_uploads(upload_keys:)	×
465
466	return head(:forbidden) unless deleted_uploads.empty?	×
467	else
468	@work = upload_service.update_precurated_file_list(added_files_param, deleted_files_param)	×
469	end
470
471	process_updates	×
472	end
473
474	def embargo_date_param	1✔
475	params["embargo-date"]	×
476	end
477
478	def embargo_date	1✔
479	return nil if embargo_date_param.blank?	×
480
481	Date.parse(embargo_date_param)	×
482	rescue Date::Error
483	Rails.logger.error("Failed to parse the embargo date #{embargo_date_param} for Work #{@work.id}")	×
484	nil	×
485	end
486
487	def update_params	1✔
488	{
489	group_id: params_group_id,	×
490	embargo_date:,
491	resource: FormToResourceService.convert(params, @work)
492	}
493	end
494
495	def added_files_param	1✔
496	Array(work_params[:pre_curation_uploads_added])	×
497	end
498
499	def deleted_files_param	1✔
500	deleted_count = (work_params["deleted_files_count"] \|\| "0").to_i	×
501	(1..deleted_count).map { \|i\| work_params["deleted_file_#{i}"] }.select(&:present?)	×
502	end
503
504	def process_updates	1✔
505	work_before = @work.dup	×
506	if @work.update(update_params)	×
507	work_compare = WorkCompareService.new(work_before, @work)	×
508	@work.log_changes(work_compare, current_user.id)	×
509
510	if @wizard_mode	×
511	redirect_to work_readme_select_url(@work)	×
512	else
513	redirect_to work_url(@work), notice: "Work was successfully updated."	×
514	end
515	else
516	# This is needed for rendering HTML views with validation errors
517	@uploads = @work.uploads	×
518	@wizard_mode = wizard_mode?	×
519	@form_resource_decorator = FormResourceDecorator.new(@work, current_user)	×
520
521	render :edit, status: :unprocessable_entity	×
522	end
523	end
524
525	def params_group_id	1✔
526	# Do not allow a nil for the group id
527	@params_group_id \|\|= begin	×
528	group_id = params[:group_id]	×
529	if group_id.blank?	×
530	group_id = current_user.default_group.id	×
531	Honeybadger.notify("We got a nil group as part of the parameters #{params} #{request}")	×
532	end
533	group_id	×
534	end
535	end
536
537	def migrated?	1✔
538	return false unless params.key?(:submit)	×
539
540	params[:submit] == "Migrate"	×
541	end
542	end
543	# rubocop:enable Metrics/ClassLength

pulibrary / pdc_describe / 7ae96b6b-0a64-4479-9fa1-8ba6526e2c87

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