cace366a-ffad-45f1-9b60-678e607fa527

Committed 14 May 2024 02:21PM UTC coverage: 60.862% (-35.0%) from 95.908%

Build # cace366a-ffad-45f1-9b60-678e607fa527

Build Type

push

circleci

Committed by

jrgriffiniii

Commit Message

wip

Run Details

1 of 3 new or added lines in 2 files covered. (33.33%)

1194 existing lines in 57 files now uncovered.

2076 of 3411 relevant lines covered (60.86%)

22.71 hits per line

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93.18

/app/services/pul_datacite.rb

# frozen_string_literal: true
class PULDatacite
  class << self
    # Determines whether or not a test DOI should be referenced
    # (this avoids requests to the DOI API endpoint for non-production deployments)
    # @return [Boolean]
    def publish_test_doi?
      (Rails.env.development? || Rails.env.test?) && Rails.configuration.datacite.user.blank?
    end
  end

  attr_reader :datacite_connection, :work, :metadata

  def initialize(work)
    @datacite_connection = Datacite::Client.new(username: Rails.configuration.datacite.user,
                                                password: Rails.configuration.datacite.password,
                                                host: Rails.configuration.datacite.host)
    @work = work
    @metadata = work.metadata
  end

  def draft_doi
    if PULDatacite.publish_test_doi?
      Rails.logger.info "Using hard-coded test DOI during development."
      "10.34770/tbd"
    else
      result = datacite_connection.autogenerate_doi(prefix: Rails.configuration.datacite.prefix)
      if result.success?
        result.success.doi
      else
        raise("Error generating DOI. #{result.failure.status} / #{result.failure.reason_phrase}")
      end
    end
  end

  def publish_doi(user)
    return Rails.logger.info("Publishing hard-coded test DOI during development.") if PULDatacite.publish_test_doi?

    if work.doi&.starts_with?(Rails.configuration.datacite.prefix)
      result = datacite_connection.update(id: work.doi, attributes: doi_attributes)
      if result.failure?
        resolved_user = curator_or_current_uid(user)
        message = "@#{resolved_user} Error publishing DOI. #{result.failure.status} / #{result.failure.reason_phrase}"
        WorkActivity.add_work_activity(work.id, message, user.id, activity_type: WorkActivity::DATACITE_ERROR)
      end
    elsif work.ark.blank? # we can not update the url anywhere
      Honeybadger.notify("Publishing for a DOI we do not own and no ARK is present: #{work.doi}")
    end
  rescue Faraday::ConnectionFailed
    sleep 1
    retry
  end

  # This is the url that should be used for ARK and DOI redirection. It will search the
  # index for the DOI and redirect the use appropriately.
  def doi_attribute_url
    "https://datacommons.princeton.edu/discovery/doi/#{work.doi}"
  end

  def curator_or_current_uid(user)
    persisted = if work.curator.nil?
                  user
                else
                  work.curator
                end
    persisted.uid
  end

  private

    def doi_attribute_resource
      PDCMetadata::Resource.new_from_jsonb(metadata)
    end

    def doi_attribute_xml
      unencoded = doi_attribute_resource.to_xml
      Base64.encode64(unencoded)
    end

    def doi_attributes
      {
        "event" => "publish",
        "xml" => doi_attribute_xml,
        "url" => doi_attribute_url
      }
    end
end

1	# frozen_string_literal: true
2	class PULDatacite	1✔
3	class << self	1✔
4	# Determines whether or not a test DOI should be referenced
5	# (this avoids requests to the DOI API endpoint for non-production deployments)
6	# @return [Boolean]
7	def publish_test_doi?	1✔
8	(Rails.env.development? \|\| Rails.env.test?) && Rails.configuration.datacite.user.blank?	8✔
9	end
10	end
11
12	attr_reader :datacite_connection, :work, :metadata	1✔
13
14	def initialize(work)	1✔
15	@datacite_connection = Datacite::Client.new(username: Rails.configuration.datacite.user,	8✔
16	password: Rails.configuration.datacite.password,
17	host: Rails.configuration.datacite.host)
18	@work = work	8✔
19	@metadata = work.metadata	8✔
20	end
21
22	def draft_doi	1✔
23	if PULDatacite.publish_test_doi?	4✔
24	Rails.logger.info "Using hard-coded test DOI during development."	1✔
25	"10.34770/tbd"	1✔
26	else
27	result = datacite_connection.autogenerate_doi(prefix: Rails.configuration.datacite.prefix)	3✔
28	if result.success?	3✔
29	result.success.doi	2✔
30	else
31	raise("Error generating DOI. #{result.failure.status} / #{result.failure.reason_phrase}")	1✔
32	end
33	end
34	end
35
36	def publish_doi(user)	1✔
37	return Rails.logger.info("Publishing hard-coded test DOI during development.") if PULDatacite.publish_test_doi?	4✔
38
39	if work.doi&.starts_with?(Rails.configuration.datacite.prefix)	3✔
40	result = datacite_connection.update(id: work.doi, attributes: doi_attributes)	2✔
41	if result.failure?	2✔
42	resolved_user = curator_or_current_uid(user)	1✔
43	message = "@#{resolved_user} Error publishing DOI. #{result.failure.status} / #{result.failure.reason_phrase}"	1✔
44	WorkActivity.add_work_activity(work.id, message, user.id, activity_type: WorkActivity::DATACITE_ERROR)	1✔
45	end
46	elsif work.ark.blank? # we can not update the url anywhere	1✔
47	Honeybadger.notify("Publishing for a DOI we do not own and no ARK is present: #{work.doi}")	1✔
48	end
49	rescue Faraday::ConnectionFailed
UNCOV 50	sleep 1	×
UNCOV 51	retry	×
52	end
53
54	# This is the url that should be used for ARK and DOI redirection. It will search the
55	# index for the DOI and redirect the use appropriately.
56	def doi_attribute_url	1✔
57	"https://datacommons.princeton.edu/discovery/doi/#{work.doi}"	2✔
58	end
59
60	def curator_or_current_uid(user)	1✔
61	persisted = if work.curator.nil?	1✔
62	user	1✔
63	else
UNCOV 64	work.curator	×
65	end
66	persisted.uid	1✔
67	end
68
69	private	1✔
70
71	def doi_attribute_resource	1✔
72	PDCMetadata::Resource.new_from_jsonb(metadata)	2✔
73	end
74
75	def doi_attribute_xml	1✔
76	unencoded = doi_attribute_resource.to_xml	2✔
77	Base64.encode64(unencoded)	2✔
78	end
79
80	def doi_attributes	1✔
81	{
82	"event" => "publish",	2✔
83	"xml" => doi_attribute_xml,
84	"url" => doi_attribute_url
85	}
86	end
87	end

pulibrary / pdc_describe / cace366a-ffad-45f1-9b60-678e607fa527

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