8104a809-ff43-45c7-a383-49e5e81ab55c

Committed 24 Jul 2025 09:27PM UTC coverage: 64.93%. First build

Build # 8104a809-ff43-45c7-a383-49e5e81ab55c

Build Type

Pull #1640

circleci

Committed by

web-flow

Commit Message

Merge branch 'main' into projects_controller_spec

Pull Request Pull Request #1640: Refactored code that produces the XML representation

Run Details

4 of 18 branches covered (22.22%)

14 of 16 new or added lines in 3 files covered. (87.5%)

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/app/controllers/projects_controller.rb

# frozen_string_literal: true
class ProjectsController < ApplicationController

  before_action :set_breadcrumbs
  before_action :authenticate_user!

  def new
    add_breadcrumb("New Project Request")
    return build_new_project if current_user.eligible_sponsor?

    redirect_to dashboard_path
  end

  def project_params
    params.dup
  end

  def create
    metadata_params = params.dup
    metadata_params[:status] = Project::PENDING_STATUS
    metadata_params[:created_by] = current_user.uid
    metadata_params[:created_on] = Time.current.in_time_zone("America/New_York").iso8601
    project_metadata = ProjectMetadata.new_from_params(metadata_params)

    build_new_project # calling private method to build a new project and set a class variable @project
    project.create!(initial_metadata: project_metadata, user: current_user)
    if project.metadata_model.project_id != nil
      begin
        mailer = TigerdataMailer.with(project_id: project.id)
        message_delivery = mailer.project_creation
        message_delivery.deliver_later

        redirect_to project_confirmation_path(project)
      rescue StandardError => mailer_error
        raise(TigerData::MailerError, mailer_error)
      end
    else
      render :new
    end
  rescue TigerData::MailerError => mailer_error
    logger_message = "Error encountered creating the project #{project.id} as user #{current_user.email}"
    Rails.logger.error(logger_message)
    honeybadger_context = {
      current_user_email: current_user.email,
      project_id: project.id,
      project_metadata: project.metadata
    }
    Honeybadger.notify(mailer_error, context: honeybadger_context)

    error_message = "We are sorry, while the project was successfully created, an error was encountered which prevents the delivery of an e-mail message confirming this. Please know that this error has been logged, and shall be reviewed by members of RDSS."
    flash[:notice] = error_message

    render :new
  rescue StandardError => error
    logger_message = if project.persisted?
                      "Error encountered creating the project #{project.id} as user #{current_user.email}"
                     else
                      "Error encountered creating the project #{metadata_params[:title]} as user #{current_user.email}"
                     end
    Rails.logger.error(logger_message)
    honeybadger_context = {
      current_user_email: current_user.email,
      project_id: project.id,
      project_metadata: project.metadata
    }
    Honeybadger.notify(error, context: honeybadger_context)

    error_message = "We are sorry, the project was not successfully created, and an error was encountered which prevents the delivery of an e-mail message confirming this. Please know that this error has been logged, and shall be reviewed by members of RDSS promptly."

    flash[:notice] = error_message
    render :new
  end

  def details
    return if project.blank?

    add_breadcrumb(project.title, project_path)
    add_breadcrumb("Details")

    @departments = project.departments.join(", ")
    @project_metadata = project.metadata_model

    @data_sponsor = User.find_by(uid: @project_metadata.data_sponsor)
    @data_manager = User.find_by(uid: @project_metadata.data_manager)

    read_only_uids = @project_metadata.ro_users
    data_read_only_users = read_only_uids.map { |uid| ReadOnlyUser.find_by(uid:) }.reject(&:blank?)

    read_write_uids = @project_metadata.rw_users
    data_read_write_users = read_write_uids.map { |uid| User.find_by(uid:) }.reject(&:blank?)

    unsorted_data_users = data_read_only_users + data_read_write_users
    sorted_data_users = unsorted_data_users.sort_by { |u| u.family_name || u.uid }
    @data_users = sorted_data_users.uniq { |u| u.uid }
    user_model_names = @data_users.map(&:display_name_safe)
    @data_user_names = user_model_names.join(", ")

    @provenance_events = project.provenance_events.where.not(event_type: ProvenanceEvent::STATUS_UPDATE_EVENT_TYPE)

    @project_eligible_to_edit = true if project.status == Project::APPROVED_STATUS && eligible_editor?

    @project_metadata = @project.metadata
    @project_id = @project_metadata[:project_id] || {}
    @storage_capacity = @project_metadata[:storage_capacity]
    @size = @storage_capacity[:size]
    @unit = @storage_capacity[:unit]

    @requested_size = @size[:requested]
    @requested_unit = @unit[:requested]

    @approved_size = @size[:approved]
    @approved_unit = @unit[:approved]

    @storage_expectations = @project_metadata[:storage_performance_expectations]
    @requested_storage_expectations = @storage_expectations[:requested]
    @approved_storage_expectations = @storage_expectations[:approved]

    @project_purpose = @project_metadata[:project_purpose]


    @project_session = "details"

    respond_to do |format|
      format.html do
        @project = ProjectShowPresenter.new(project)
      end
      format.json do
        render json: project.to_json
      end
      format.xml do
        render xml: project.to_xml
      end
    end
  end

  def edit
    add_breadcrumb(project.title, project_path)
    add_breadcrumb("Edit")
    project
    if project.metadata_model.status != Project::APPROVED_STATUS
      flash[:notice] = "Pending projects can not be edited."
      redirect_to project
    elsif project.metadata_model.status == Project::APPROVED_STATUS && !eligible_editor? #check if the current user is a sponsor or a manager
      flash[:notice] = "Only data sponsors and data managers can revise this project."
      redirect_to project
    end
  end

  def update
    @project = Project.find(params[:id])
    #Approve action
    if params.key?("approved")
      @project.metadata_model.update_with_params(params, current_user)
      @project.approve!(current_user:)
    end

    #Edit action
    if params.key?("title")
      @project.metadata_model.status = @project.metadata_model.status || Project::PENDING_STATUS
      @project.metadata_model.update_with_params(params, current_user)
    end

    # @todo ProjectMetadata should be refactored to implement ProjectMetadata.valid?(updated_metadata)
    if project.save and params.key?("approved")
      redirect_to project_approval_received_path(@project)
    elsif project.save and params.key?("title")
      redirect_to project_revision_confirmation_path(@project)
    else
      render :edit
    end
  end

  def index
    if current_user.eligible_sysadmin?
      @projects = Project.all
    else
      flash[:alert] = I18n.t(:access_denied)
      redirect_to dashboard_path
    end
  end

  def confirmation; end
  def revision_confirmation; end

  def show

    return if project.blank?
    add_breadcrumb(project.title, project_path)
    add_breadcrumb("Contents")

    @latest_completed_download = current_user.user_requests.where(project_id: @project.id, state: "completed").order(:completion_time).last
    @storage_usage = project.storage_usage(session_id: current_user.mediaflux_session)
    @storage_capacity = project.storage_capacity(session_id: current_user.mediaflux_session)

    @num_files = project.asset_count(session_id: current_user.mediaflux_session)

    @file_list = project.file_list(session_id: current_user.mediaflux_session, size: 100)
    @files = @file_list[:files]
    @files.sort_by!(&:path)
    @project = ProjectShowPresenter.new(project)

    @project_session = "content"
    respond_to do |format|
      format.html { render }
      format.xml { render xml: @project.to_xml }
    end
  end

  # GET "projects/:id/:id-mf"
  #
  # This action is used to render the mediaflux metadata for a project.
  def show_mediaflux
    project_id = params[:id]
    project = Project.find(project_id)
    if project.mediaflux_id == 0
      flash[:error] = "Project has not been created in Mediaflux"
      redirect_to project_path(project_id)
    else
      respond_to do |format|
        format.xml do
          render xml: project.mediaflux_meta_xml(user: current_user)
        end
      end
    end
  end

  def project_job_service
    @project_job_service ||= ProjectJobService.new(project:)
  end

  def list_contents
    return if project.blank?

    project_job_service.list_contents_job(user: current_user)

    json_response = {
      message: "File list for \"#{project.title}\" is being generated in the background. A link to the downloadable file list will be available in the \"Recent Activity\" section of your dashboard when it is available. You may safely navigate away from this page or close this tab."
    }
    render json: json_response
  rescue => ex
    message = "Error producing document list (project id: #{project&.id}): #{ex.message}"
    Rails.logger.error(message)
    Honeybadger.notify(message)
    render json: { message: "Document list could not be generated." }
  end

  def file_list_download
    job_id = params[:job_id]
    user_request = FileInventoryRequest.where(job_id:job_id).first
    if user_request.nil?
      # TODO: handle error
      redirect_to "/"
    else
      filename = user_request.output_file
      send_data File.read(filename), type: "text/plain", filename: "filelist.csv", disposition: "attachment"
    end
  end

  def approve
    if current_user.eligible_sysadmin?
      add_breadcrumb(project.title, project_path)
      add_breadcrumb("Approval Settings", project_approve_path)
      add_breadcrumb("Edit")
      project
      @departments = project.departments.join(", ")
      @project_metadata = project.metadata
      sponsor_uid = @project_metadata[:data_sponsor]
      @data_sponsor = User.find_by(uid: sponsor_uid)
      @provenance_events = project.provenance_events.where.not(event_type: ProvenanceEvent::STATUS_UPDATE_EVENT_TYPE)

      @title = @project_metadata["title"]
    else redirect_to dashboard_path
    end
  end

  private

    def build_new_project
      @project ||= Project.new
    end

    def project
      @project ||= begin
        project = Project.find(params[:id])
        if project.user_has_access?(user: current_user)
          project
        else
          flash[:alert] = I18n.t(:access_denied)
          redirect_to dashboard_path
          nil
        end
      end
    end

    def eligible_editor?
      return true if current_user.eligible_sponsor? or current_user.eligible_manager?
    end

    def shared_file_location(filename)
      raise "Shared location is not configured" if Rails.configuration.mediaflux["shared_files_location"].blank?
      location = Pathname.new(Rails.configuration.mediaflux["shared_files_location"])
      location.join(filename).to_s
    end

    def set_breadcrumbs
      add_breadcrumb("Dashboard",dashboard_path)
    end
end

1	# frozen_string_literal: true
2	class ProjectsController < ApplicationController	1✔
3
4	before_action :set_breadcrumbs	1✔
5	before_action :authenticate_user!	1✔
6
7	def new	1✔
8	add_breadcrumb("New Project Request")	16✔
9	return build_new_project if current_user.eligible_sponsor?	16✔
10
11	redirect_to dashboard_path	2✔
12	end
13
14	def project_params	1✔
15	params.dup	×
16	end
17
18	def create	1✔
19	metadata_params = params.dup	12✔
20	metadata_params[:status] = Project::PENDING_STATUS	12✔
21	metadata_params[:created_by] = current_user.uid	12✔
22	metadata_params[:created_on] = Time.current.in_time_zone("America/New_York").iso8601	12✔
23	project_metadata = ProjectMetadata.new_from_params(metadata_params)	12✔
24
25	build_new_project # calling private method to build a new project and set a class variable @project	12✔
26	project.create!(initial_metadata: project_metadata, user: current_user)	12✔
27	if project.metadata_model.project_id != nil	12✔
28	begin
29	mailer = TigerdataMailer.with(project_id: project.id)	12✔
30	message_delivery = mailer.project_creation	12✔
31	message_delivery.deliver_later	12✔
32
33	redirect_to project_confirmation_path(project)	11✔
34	rescue StandardError => mailer_error
35	raise(TigerData::MailerError, mailer_error)	2✔
36	end
37	else
38	render :new	×
39	end
40	rescue TigerData::MailerError => mailer_error
41	logger_message = "Error encountered creating the project #{project.id} as user #{current_user.email}"	2✔
42	Rails.logger.error(logger_message)	2✔
43	honeybadger_context = {
44	current_user_email: current_user.email,	2✔
45	project_id: project.id,
46	project_metadata: project.metadata
47	}
48	Honeybadger.notify(mailer_error, context: honeybadger_context)	2✔
49
50	error_message = "We are sorry, while the project was successfully created, an error was encountered which prevents the delivery of an e-mail message confirming this. Please know that this error has been logged, and shall be reviewed by members of RDSS."	2✔
51	flash[:notice] = error_message	2✔
52
53	render :new	2✔
54	rescue StandardError => error
55	logger_message = if project.persisted?	×
56	"Error encountered creating the project #{project.id} as user #{current_user.email}"	×
57	else
58	"Error encountered creating the project #{metadata_params[:title]} as user #{current_user.email}"	×
59	end
60	Rails.logger.error(logger_message)	×
61	honeybadger_context = {
62	current_user_email: current_user.email,	×
63	project_id: project.id,
64	project_metadata: project.metadata
65	}
66	Honeybadger.notify(error, context: honeybadger_context)	×
67
68	error_message = "We are sorry, the project was not successfully created, and an error was encountered which prevents the delivery of an e-mail message confirming this. Please know that this error has been logged, and shall be reviewed by members of RDSS promptly."	×
69
70	flash[:notice] = error_message	×
71	render :new	×
72	end
73
74	def details	1✔
75	return if project.blank?	31✔
76
77	add_breadcrumb(project.title, project_path)	30✔
78	add_breadcrumb("Details")	30✔
79
80	@departments = project.departments.join(", ")	30✔
81	@project_metadata = project.metadata_model	30✔
82
83	@data_sponsor = User.find_by(uid: @project_metadata.data_sponsor)	30✔
84	@data_manager = User.find_by(uid: @project_metadata.data_manager)	30✔
85
86	read_only_uids = @project_metadata.ro_users	30✔
87	data_read_only_users = read_only_uids.map { \|uid\| ReadOnlyUser.find_by(uid:) }.reject(&:blank?)	46✔
88
89	read_write_uids = @project_metadata.rw_users	30✔
90	data_read_write_users = read_write_uids.map { \|uid\| User.find_by(uid:) }.reject(&:blank?)	42✔
91
92	unsorted_data_users = data_read_only_users + data_read_write_users	30✔
93	sorted_data_users = unsorted_data_users.sort_by { \|u\| u.family_name \|\| u.uid }	58✔
94	@data_users = sorted_data_users.uniq { \|u\| u.uid }	50✔
95	user_model_names = @data_users.map(&:display_name_safe)	30✔
96	@data_user_names = user_model_names.join(", ")	30✔
97
98	@provenance_events = project.provenance_events.where.not(event_type: ProvenanceEvent::STATUS_UPDATE_EVENT_TYPE)	30✔
99
100	@project_eligible_to_edit = true if project.status == Project::APPROVED_STATUS && eligible_editor?	30✔
101
102	@project_metadata = @project.metadata	30✔
103	@project_id = @project_metadata[:project_id] \|\| {}	30✔
104	@storage_capacity = @project_metadata[:storage_capacity]	30✔
105	@size = @storage_capacity[:size]	30✔
106	@unit = @storage_capacity[:unit]	30✔
107
108	@requested_size = @size[:requested]	30✔
109	@requested_unit = @unit[:requested]	30✔
110
111	@approved_size = @size[:approved]	30✔
112	@approved_unit = @unit[:approved]	30✔
113
114	@storage_expectations = @project_metadata[:storage_performance_expectations]	30✔
115	@requested_storage_expectations = @storage_expectations[:requested]	30✔
116	@approved_storage_expectations = @storage_expectations[:approved]	30✔
117
118	@project_purpose = @project_metadata[:project_purpose]	30✔
119
120
121	@project_session = "details"	30✔
122
123	respond_to do \|format\|	30✔
124	format.html do	30✔
125	@project = ProjectShowPresenter.new(project)	27✔
126	end
127	format.json do	30✔
128	render json: project.to_json	2✔
129	end
130	format.xml do	30✔
131	render xml: project.to_xml	1✔
132	end
133	end
134	end
135
136	def edit	1✔
137	add_breadcrumb(project.title, project_path)	14✔
138	add_breadcrumb("Edit")	14✔
139	project	14✔
140	if project.metadata_model.status != Project::APPROVED_STATUS	14✔
141	flash[:notice] = "Pending projects can not be edited."	1✔
142	redirect_to project	1✔
143	elsif project.metadata_model.status == Project::APPROVED_STATUS && !eligible_editor? #check if the current user is a sponsor or a manager	13✔
144	flash[:notice] = "Only data sponsors and data managers can revise this project."	2✔
145	redirect_to project	2✔
146	end
147	end
148
149	def update	1✔
150	@project = Project.find(params[:id])	7✔
151	#Approve action
152	if params.key?("approved")	7✔
153	@project.metadata_model.update_with_params(params, current_user)	3✔
154	@project.approve!(current_user:)	3✔
155	end
156
157	#Edit action
158	if params.key?("title")	7✔
159	@project.metadata_model.status = @project.metadata_model.status \|\| Project::PENDING_STATUS	4✔
160	@project.metadata_model.update_with_params(params, current_user)	4✔
161	end
162
163	# @todo ProjectMetadata should be refactored to implement ProjectMetadata.valid?(updated_metadata)
164	if project.save and params.key?("approved")	7✔
165	redirect_to project_approval_received_path(@project)	3✔
166	elsif project.save and params.key?("title")	4✔
167	redirect_to project_revision_confirmation_path(@project)	4✔
168	else
169	render :edit	×
170	end
171	end
172
173	def index	1✔
174	if current_user.eligible_sysadmin?	5✔
175	@projects = Project.all	1✔
176	else
177	flash[:alert] = I18n.t(:access_denied)	4✔
178	redirect_to dashboard_path	4✔
179	end
180	end
181
182	def confirmation; end	1✔
183	def revision_confirmation; end	1✔
184
185	def show	1✔
186
187	return if project.blank?	29✔
188	add_breadcrumb(project.title, project_path)	28✔
189	add_breadcrumb("Contents")	28✔
190
191	@latest_completed_download = current_user.user_requests.where(project_id: @project.id, state: "completed").order(:completion_time).last	28✔
192	@storage_usage = project.storage_usage(session_id: current_user.mediaflux_session)	28✔
193	@storage_capacity = project.storage_capacity(session_id: current_user.mediaflux_session)	24✔
194
195	@num_files = project.asset_count(session_id: current_user.mediaflux_session)	24✔
196
197	@file_list = project.file_list(session_id: current_user.mediaflux_session, size: 100)	24✔
198	@files = @file_list[:files]	24✔
199	@files.sort_by!(&:path)	24✔
200	@project = ProjectShowPresenter.new(project)	24✔
201
202	@project_session = "content"	24✔
203	respond_to do \|format\|	24✔
204	format.html { render }	47✔
205	format.xml { render xml: @project.to_xml }	25✔
206	end
207	end
208
209	# GET "projects/:id/:id-mf"
210	#
211	# This action is used to render the mediaflux metadata for a project.
212	def show_mediaflux	1✔
213	project_id = params[:id]	1✔
214	project = Project.find(project_id)	1✔
215	if project.mediaflux_id == 0	1✔
NEW 216	flash[:error] = "Project has not been created in Mediaflux"	×
NEW 217	redirect_to project_path(project_id)	×
218	else
219	respond_to do \|format\|	1✔
220	format.xml do	1✔
221	render xml: project.mediaflux_meta_xml(user: current_user)	1✔
222	end
223	end
224	end
225	end
226
227	def project_job_service	1✔
228	@project_job_service \|\|= ProjectJobService.new(project:)	×
229	end
230
231	def list_contents	1✔
232	return if project.blank?	1✔
233
234	project_job_service.list_contents_job(user: current_user)	×
235
236	json_response = {
237	message: "File list for \"#{project.title}\" is being generated in the background. A link to the downloadable file list will be available in the \"Recent Activity\" section of your dashboard when it is available. You may safely navigate away from this page or close this tab."	×
238	}
239	render json: json_response	×
240	rescue => ex
241	message = "Error producing document list (project id: #{project&.id}): #{ex.message}"	×
242	Rails.logger.error(message)	×
243	Honeybadger.notify(message)	×
244	render json: { message: "Document list could not be generated." }	×
245	end
246
247	def file_list_download	1✔
248	job_id = params[:job_id]	×
249	user_request = FileInventoryRequest.where(job_id:job_id).first	×
250	if user_request.nil?	×
251	# TODO: handle error
252	redirect_to "/"	×
253	else
254	filename = user_request.output_file	×
255	send_data File.read(filename), type: "text/plain", filename: "filelist.csv", disposition: "attachment"	×
256	end
257	end
258
259	def approve	1✔
260	if current_user.eligible_sysadmin?	6✔
261	add_breadcrumb(project.title, project_path)	3✔
262	add_breadcrumb("Approval Settings", project_approve_path)	3✔
263	add_breadcrumb("Edit")	3✔
264	project	3✔
265	@departments = project.departments.join(", ")	3✔
266	@project_metadata = project.metadata	3✔
267	sponsor_uid = @project_metadata[:data_sponsor]	3✔
268	@data_sponsor = User.find_by(uid: sponsor_uid)	3✔
269	@provenance_events = project.provenance_events.where.not(event_type: ProvenanceEvent::STATUS_UPDATE_EVENT_TYPE)	3✔
270
271	@title = @project_metadata["title"]	3✔
272	else redirect_to dashboard_path	3✔
273	end
274	end
275
276	private	1✔
277
278	def build_new_project	1✔
279	@project \|\|= Project.new	26✔
280	end
281
282	def project	1✔
283	@project \|\|= begin	530✔
284	project = Project.find(params[:id])	76✔
285	if project.user_has_access?(user: current_user)	76✔
286	project	73✔
287	else
288	flash[:alert] = I18n.t(:access_denied)	3✔
289	redirect_to dashboard_path	3✔
290	nil	3✔
291	end
292	end
293	end
294
295	def eligible_editor?	1✔
296	return true if current_user.eligible_sponsor? or current_user.eligible_manager?	20✔
297	end
298
299	def shared_file_location(filename)	1✔
300	raise "Shared location is not configured" if Rails.configuration.mediaflux["shared_files_location"].blank?	×
301	location = Pathname.new(Rails.configuration.mediaflux["shared_files_location"])	×
302	location.join(filename).to_s	×
303	end
304
305	def set_breadcrumbs	1✔
306	add_breadcrumb("Dashboard",dashboard_path)	141✔
307	end
308	end

pulibrary / tigerdata-app / 8104a809-ff43-45c7-a383-49e5e81ab55c

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