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• jdc-2538-blast-core_nt
• 1795-jdc-show-name-statistics
• 1796-proposed-name-blank-message
• 1806-jdc-classification-inherit
• 1808-sequence-notes-caron
• 1841-all_names-link
• 1959-restore-if-site-search-link
• 2025-no-such-file
• 2027-coveralls-nodejs-warning
• 2033-project-violations-error
• 2040-queuedemail-test_dump
• 2042-post-logout
• 2046-refresh_all_user_stats-argument-error
• 2048-POST-admin-mode
• 2077-emojis-in-comments
• 2213-observation-report-guard
• 2231-inat-import-form
• 2242-testing-updates
• 2267-email-webmaster-question
• 2303-fix-blast-links
• 2427-ddd-link
• 2479-inat-observation_view
• 2494-describe-make-regular-member
• 2505-jdc-inat-hung
• 2531-inat-superimporter-anothers-obs
• 2546-add-record-to-nonexistent-fungariam
• 2571-jdc-revise-mcp_searchable
• 2577-backfill-original_filename
• 2581-jdc-imported-sequence-user
• 2673-jdc-inat-import-emails
• 2675-jdc-double-import
• 2722-jdc-admin-destroy-user
• 2762-remove-email-all
• 2822-jdc-about-this-taxon-proposals
• 2897-obs-subquery-scopes
• 2921-update-symbiota
• 2995-edit-externallink-error
• 3025-list-pattern-search-location-nil-or-unknown
• 3026-snapshot-as-note
• 3028-improve-specimen-labels
• 3054-mycoportal-update-readme
• 3083-simplify-the-observation-list-create-form
• 3180-inat-notes-blank-line
• JoeCohen-patch-1
• account-profile-new-location-redirect
• activejob-solid-queue
• add-box_area-to-locations
• add-center_lat-center_lng-to-locations
• add-check-for-broken-references-to-crontab
• add-inferred_point-to-observations
• add-language-id-to-translation-string-versions-table
• add-more-to-public-gitignore
• add-puma-runner
• add-zero-enum-values
• adjust-obs-form-system-test-expects
• admin-mode-off-link
• annotate-pattern-search
• arel-extensions-deprecations
• autocompleter-fix-hyperactive-refresh
• autocompleter-hidden-field-before-input
• autocompleters-refactor-js
• better-created-flash
• bin-dev-chmod-x
• break-up-api2test
• break-up-autocompleter-system-test
• broadcast-fix
• bump-bundle-7.1.4
• bump-up-page-title-size
• bundle-update-2025-08-04
• bundle-update-ruby-332
• change-box-area-method-name
• change_translation_string_tags
• create-location-modal
• create-obs-location
• create-obs-reorg
• create-obs-steps
• dartsass-sprockets
• dartsass-sprockets-fix
• date-select-option-refinement
• debug-user-search
• default-scope-to-index-order
• dependabot/bundler/actionpack-7.1.5.1
• dependabot/bundler/activerecord-7.2.2.2
• dependabot/bundler/brakeman-7.1.0
• dependabot/bundler/google-cloud-storage-1.57.0
• dependabot/bundler/importmap-rails-2.2.0
• dependabot/bundler/jbuilder-2.14.0
• dependabot/bundler/jbuilder-2.14.1
• dependabot/bundler/json-2.10.2
• dependabot/bundler/mini_racer-0.19.0
• dependabot/bundler/mission_control-jobs-1.1.0
• dependabot/bundler/net-imap-0.5.6
• dependabot/bundler/net-imap-0.5.7
• dependabot/bundler/nokogiri-1.18.3
• dependabot/bundler/nokogiri-1.18.4
• dependabot/bundler/nokogiri-1.18.8
• dependabot/bundler/nokogiri-1.18.9
• dependabot/bundler/oauth2-2.0.14
• dependabot/bundler/oauth2-2.0.16
• dependabot/bundler/oauth2-2.0.17
• dependabot/bundler/prawn-svg-0.38.0
• dependabot/bundler/puma-6.6.1
• dependabot/bundler/puma-7.0.1
• dependabot/bundler/puma-7.0.3
• dependabot/bundler/rack-3.1.10
• dependabot/bundler/rack-3.1.12
• dependabot/bundler/rack-3.1.14
• dependabot/bundler/rack-3.1.16
• dependabot/bundler/rack-session-2.1.1
• dependabot/bundler/redis-5.4.0
• dependabot/bundler/redis-5.4.1
• dependabot/bundler/rubocop-1.78.0
• dependabot/bundler/rubocop-1.79.0
• dependabot/bundler/rubocop-1.79.1
• dependabot/bundler/rubocop-1.79.2
• dependabot/bundler/rubocop-1.80.0
• dependabot/bundler/rubocop-1.80.1
• dependabot/bundler/rubocop-1.80.2
• dependabot/bundler/rubocop-performance-1.26.0
• dependabot/bundler/rubocop-rails-2.33.0
• dependabot/bundler/rubocop-rails-2.33.3
• dependabot/bundler/rubyzip-2.4.1
• dependabot/bundler/rubyzip-3.0.1
• dependabot/bundler/rubyzip-3.0.2
• dependabot/bundler/rubyzip-3.1.0
• dependabot/bundler/simplecov-lcov-0.9.0
• dependabot/bundler/solid_cable-3.0.12
• dependabot/bundler/solid_queue-1.2.0
• dependabot/bundler/solid_queue-1.2.1
• description-link-default
• direct-link-project-observations-of-name
• disable-link-prefetching
• disconnect-field-slip-job-stimulus-controller
• document-query-attributes
• enable-puma-dev
• enum-positional-args
• eol-dwca
• extensions-to-boolean
• field-slip-qr-reader-input
• field_slip-index-with-query
• fix-article-form-model-missing
• fix-blocked-ip-message
• fix-bug
• fix-bug-in-extract_log
• fix-bug-in-parse_log
• fix-clean-sql
• fix-date-select-helper
• fix-deploy
• fix-file-input
• fix-flow-bug
• fix-id_of_nested_field
• fix-identify-ui
• fix-location-form-show-locked
• fix-names-need-description
• fix-naming-locals
• fix-parse-log
• fix-parse-log-correctly
• fix-pattern-search-keyword-cookie-overflow
• fix-puma
• fix-puma-config
• fix-tooltip-display
• form-images-fix-remove-image-button
• form-map-fields
• form-name-feedback-what-given-name
• generalize-runners
• geolocation-controller
• herbarium-form-modal
• herbarium_accession_number_observation_form
• host-jquery-importmap
• image-exif-data
• improve-location-autocompleter
• incorporate-production-config-changes
• initialize-extensions
• jdc-1778-create-observation-name-blank
• jdc-1817-sensu-lato-propagation
• jdc-1832-sidebar-caches
• jdc-1844-view-project-constraint-violations
• jdc-1845-overbroad-project-permission
• jdc-1884-name-external-links
• jdc-1955-inat-import
• jdc-20250612-bundle-update
• jdc-2072-locationless-project-violations
• jdc-2084-locationmerge-incomplete
• jdc-2151-licenses_controller
• jdc-2310-ditch-hide_specimen_stuff
• jdc-2312-field-slips-inat-import
• jdc-2312v2-field-slips-inat-import
• jdc-2319-stimulus-inat-import
• jdc-2320-inat-rate-limit
• jdc-2340-enable-import_all
• jdc-2371-fix-deprecated-arel_extensions
• jdc-2382-inat-job-errors
• jdc-2385-inat-obs-geoloc-absent
• jdc-2386-inat-proposed-name-details
• jdc-2405-name-default-rank
• jdc-2415-merged-location-notes
• jdc-2456-excess-inat-ids-listed
• jdc-2458-speed-up-fresh_import
• jdc-2460-inat-tracker-importables
• jdc-2460-inat-tracker-stimulus-all-updates
• jdc-2465-inat-empty-notes
• jdc-2471-fungarium-specimen-hotlink
• jdc-2534-solidqueue-uninitialized-constant
• jdc-2553-fix-download-observations
• jdc-2565-fungarium-record-email-link
• jdc-2575-inat-photo-uuid
• jdc-2634-supplement-readme_macosx_notes
• jdc-2637-test_import_one_photo
• jdc-2639-inat-sp-xx-xxnn
• jdc-2652-show-non-existent-project
• jdc-2712-indistinct-search_names
• jdc-275-sequence-selected-archive
• jdc-2758-log-update-proposed-name
• jdc-2800-inat-api-gateway
• jdc-2800-inat-api-single-caller
• jdc-2827-rubocop-current-ci
• jdc-2847-nat-import-naming-user
• jdc-2849-inat-individual-api-key
• jdc-2875-brakeman-github-action
• jdc-2912-improve-inatimportjobtest
• jdc-2924-inat-calc-consensus
• jdc-2985-remove-inat-id
• jdc-3000-one-import
• jdc-3003-display-remaining-time
• jdc-3016-mcp-image-csv
• jdc-3062-dependabot-version-updates
• jdc-3075-improve-inat-error-handling
• jdc-3079-import-form-cancel-button
• jdc-3080-job-tracker-cancel-button
• jdc-3087-return-to-import-tracker
• jdc-3109-improve-inat-diagnostics
• jdc-3199-map-inat-collectors-name-to-mo-collector
• jdc-activity-log-source
• jdc-admin-edit-project-186737545
• jdc-api-doc
• jdc-api-image-upload_from_url-clean_up
• jdc-author-extended-latin
• jdc-autocorrects-20250309
• jdc-avoid-unknown-location
• jdc-brakeman-6_2_1
• jdc-brakeman-false-positive-validation
• jdc-bug-report-typo
• jdc-bump-fugit-from-1.11.0-to-1.11.1
• jdc-bundle-update-20231225
• jdc-bundle-update-2024-11
• jdc-bundle-update-20240117
• jdc-bundle-update-20241204
• jdc-bundle-update-2025-02
• jdc-bundle-update-20250219
• jdc-bundle-update-20250501
• jdc-bundle-update-20250703
• jdc-bundle-update-20250811
• jdc-bundle_update-20240503
• jdc-ci-brakeman-6_0-185281074
• jdc-ci-skip-chromium
• jdc-cover-erb
• jdc-csv
• jdc-delete-accepting_observations
• jdc-delete-bulk_editor-vestiges-186776118
• jdc-delete-codeclimate-config
• jdc-dependabot-trailing-slash
• jdc-disable-naming-variable-number
• jdc-false-collection-record
• jdc-field_slip-other_codes-inat-link
• jdc-fix-add-curator-ui
• jdc-fix-glossary-term-multiple-images
• jdc-fix-inat-observation_field
• jdc-fix-inat-redirect-url
• jdc-fix-scientific-name-label
• jdc-harden-nil-notes
• jdc-herbarium-index-no-add
• jdc-if-web-search-mashed
• jdc-import-job-log
• jdc-inat-external-link
• jdc-inat-import-collation
• jdc-inat-import-job
• jdc-inat-import-job-coverage
• jdc-inat-job-error-handling
• jdc-inat-production-credentials
• jdc-inat-super-importer
• jdc-inat-tidy-20250826
• jdc-inat_import-ignore_photos
• jdc-inat_imports_controller-create-abc
• jdc-inat_obs-class-length
• jdc-inat_obs-hash-lookup
• jdc-interactive_image-user-cleanup
• jdc-jobs-cleanup-script
• jdc-license-created_at
• jdc-license-default
• jdc-lifeforms-followup-1787
• jdc-location-contains
• jdc-location-contains-edges
• jdc-lookup_names-title-only-searched-name
• jdc-lower_case-explicit-link-186064204
• jdc-map-observations-max
• jdc-misc-nemf-obs-fields
• jdc-move-inat-job-log-to-inat_import
• jdc-mycoportal-report
• jdc-mycoportal-revised-columns-all
• jdc-mysql2_0_5_6
• jdc-new-cops-1-72-74
• jdc-new-enable-import_alll
• jdc-new-rubocop-1-74-unsafe-autocorrects
• jdc-new-tracker-cancel
• jdc-nokogiri-1_16_2
• jdc-project-add-dates
• jdc-qlty
• jdc-readme-code-tweaks
• jdc-refactor-inat-job
• jdc-remove-httparty
• jdc-remove-inat-import-link
• jdc-remove-redis
• jdc-restore-inat-id
• jdc-restore-inat-import-link
• jdc-revert-1833-sidebar-hotfix
• jdc-rubocop-1-74-safe-autocorrect
• jdc-rubocop-1-74-unsafe-autocorrects-2
• jdc-rubocop-1-74-unsafe-correctables-3
• jdc-rubocop-1-75-7
• jdc-rubocop-1_79_0
• jdc-rubocop-autocorrect-20250309
• jdc-rubocop-dual-config
• jdc-rubocop-exclude-fix
• jdc-simplify-inat-import-proposed-names
• jdc-single-quote-in-author
• jdc-sort-by_ip
• jdc-strip-blocked-ips
• jdc-temp-hide-inat
• jdc-test-index-undefined-location
• jdc-test-new-observation-year
• jdc-test-rubocop-version
• jdc-thread-offenses
• jdc-uninstall-new_relic
• jdc-unowned-observation-error
• jdc-update-preferred-licenses
• jdc-update-rubocop-20250917
• jdc-valid-to-preferred-158747886
• jdc-violation-test-refactor
• jdc=2637-test_import_one_photo
• jdc_inat_export_one
• letter-sort-refactor
• lightweight-uptime-probe-access-point
• location-columns-to-decimal
• location-field-adjustments
• location-name-cache
• location-search-controller
• locationable-controller-methods
• lookup-title-method
• main
• make-api-thread-safe
• mapset-sort-by-north
• mcp-images-only-tsv
• mo-nathan-patch-1
• mo-obs-builder
• move-external-links
• multiple-record-autocompleter
• mysql2-to-trilogy
• name-proposed-by
• name-resolver-ivars
• name-with-description-classification-differing
• new-njw-remove-rails-env-test-dependency
• nimmo-actioncable
• nimmo-activemodel-array
• nimmo-add-needs-naming-to-observations
• nimmo-add-synonym-index-to-names
• nimmo-add-target-index-to-comments
• nimmo-api2-namestest
• nimmo-autocompleter-fix
• nimmo-autocompleter-region
• nimmo-autocompleters-return-hashes
• nimmo-autocompleters-use-query-params
• nimmo-bin-dev
• nimmo-both-location-formats
• nimmo-box-scopes-params-and-methods
• nimmo-break-up-names-controller-test
• nimmo-break-up-obs-controller-test
• nimmo-break-up-some-api2-tests
• nimmo-bundle-update-3.2.2
• nimmo-cache-batch
• nimmo-cache-try2
• nimmo-carousel-heading
• nimmo-check-association-id-existence
• nimmo-checklist-ar
• nimmo-clean-up-autologin-lookups
• nimmo-clean-up-pagination
• nimmo-clean-up-recent-query-refactors
• nimmo-comments-for-object
• nimmo-contribs-paginate
• nimmo-convert-turbo-frames-to-divs-show-obs
• nimmo-create-userstats-on-create-user
• nimmo-credentials-practice
• nimmo-dartsass-rails
• nimmo-date-select-label
• nimmo-deep-find-nested-names-param-for-name-queries
• nimmo-delete-url_after_delete-helper
• nimmo-description-authors
• nimmo-description-routes
• nimmo-disable-on-click-controller
• nimmo-edit-icons-layout
• nimmo-election-naming
• nimmo-exclude-vague-locations-from-maps
• nimmo-exif-date
• nimmo-field-slip-stimulus
• nimmo-field-slips-logged-in-only
• nimmo-field_slip-templates
• nimmo-fix-contribs-images
• nimmo-fix-filter-private-method-t
• nimmo-fix-gitignore
• nimmo-fix-image-uploads-202505
• nimmo-fix-in-box-or-chaining
• nimmo-fix-maps-multiple-markers
• nimmo-fix-menu-layout-css
• nimmo-fix-name-lister
• nimmo-fix-opinion-default
• nimmo-fix-order_by
• nimmo-fix-ov-migration
• nimmo-fix-project-messages
• nimmo-fix-query-test-ordering
• nimmo-fix-section-update-compare-user
• nimmo-flash-notices-refactor
• nimmo-force-ssl
• nimmo-form-name-feedback-flash
• nimmo-hot-fix-lookup-names
• nimmo-id-range
• nimmo-image-emails
• nimmo-image-index
• nimmo-image-jobs
• nimmo-image-scripts-to-job
• nimmo-image-titles
• nimmo-inat-inflection
• nimmo-inat_import-modifications
• nimmo-index-title
• nimmo-interactive_image-partial
• nimmo-jwt-suggestions
• nimmo-letter-pagination
• nimmo-lifeform-tracker-form-method-put
• nimmo-location-undefined
• nimmo-log-create_obs
• nimmo-log-level-7.1.3
• nimmo-log-strict-loading
• nimmo-lookups-PORO
• nimmo-lookups-PORO-try-allowing-strings
• nimmo-make-obs-form-system-test-more-robusta
• nimmo-map-remove-partial
• nimmo-matrix-box-turbo-update-tests
• nimmo-matrix_grid-partial
• nimmo-matrix_table-helper
• nimmo-matrix_table-js
• nimmo-mobile-nav-cleanup
• nimmo-modal-debugger
• nimmo-move-PORO-tests
• nimmo-mrtg-login
• nimmo-name-description-panels
• nimmo-name-map
• nimmo-name-observations-menu
• nimmo-name-resolver
• nimmo-name-scope-with-rank-between
• nimmo-name-suggestions
• nimmo-name-taxonomy
• nimmo-names-default-search-type
• nimmo-names-index
• nimmo-naming-table-helper
• nimmo-navbar-pagination
• nimmo-navbar-reorg
• nimmo-new-scopes
• nimmo-no-checklist-from-image-query
• nimmo-object-link-helper-classes
• nimmo-obs-eager-loads-name-synonym
• nimmo-obs-in-box-rewrite
• nimmo-observation-and-location-scopes
• nimmo-observation-location-scope-use-in-box
• nimmo-observation-search-where
• nimmo-observation-section-update-local-assigns
• nimmo-observations-locations-controller
• nimmo-open-autocompleters
• nimmo-panels-show-name
• nimmo-params-dig
• nimmo-parents-uniq
• nimmo-pass-coercion-query
• nimmo-pattern-search-bar-refactor
• nimmo-pattern-search-help-stimulus-turbo
• nimmo-pattern-search-send-q-permalink
• nimmo-permission-helpers
• nimmo-preferred-name
• nimmo-production-debug-logging
• nimmo-production-turn-off-fragment-cache-logging
• nimmo-project-filter-refactor
• nimmo-puma-local
• nimmo-q-permalinks
• nimmo-q-permalinks-session-query-record
• nimmo-query-order_by
• nimmo-query-remove-lookups-from-validation
• nimmo-query-to-sidebar
• nimmo-query-validation_errors
• nimmo-rails-7-1-2
• nimmo-rails-7-1-3
• nimmo-re-fix-in-box-scopes-obs-location-max-area
• nimmo-recurring-cron
• nimmo-redo-observation-views-indexes
• nimmo-refactor-carousels
• nimmo-refactor-show-edit-title-helpers
• nimmo-refactor-species_list-observation-partial
• nimmo-reformat-logs-7.1.2
• nimmo-refresh-votes-table-on-vote
• nimmo-regions-clades
• nimmo-remove-clear-query-in-session
• nimmo-remove-double-spaces-en.txt
• nimmo-remove-dummy-link
• nimmo-remove-duplicate-filter-text_names
• nimmo-remove-lookup_xxx_by_name-helpers
• nimmo-remove-restrict_query_to_box
• nimmo-rename-needs-naming
• nimmo-rename-page-nav
• nimmo-reorganize-sidebar
• nimmo-retry-matrix-box-cache-unicorn
• nimmo-revert-1975
• nimmo-revert-ruby_3.3.0
• nimmo-rotate-image-to-job
• nimmo-routes-review
• nimmo-ruby-3.3.0
• nimmo-russian-doll
• nimmo-scope-and-test-catch-up
• nimmo-scope-test-cleanups
• nimmo-search-bar-refactor
• nimmo-search-form-field-columns-constants
• nimmo-search-forms-turbo
• nimmo-search-poro
• nimmo-send-file-info-to-template
• nimmo-session-return-to-upper-limit
• nimmo-show-edit-and-destroy-buttons
• nimmo-show-image
• nimmo-show-location
• nimmo-show-name-description-strict-loading
• nimmo-show-obs-edit-links
• nimmo-show-user
• nimmo-sidebar-sections
• nimmo-silence-solid_queue
• nimmo-simplify-gemfile
• nimmo-simplify-puma-rb
• nimmo-simplify-site-data
• nimmo-site-data
• nimmo-site-webmanifest
• nimmo-solid-cable
• nimmo-solid-cache
• nimmo-solid_cache-0.4
• nimmo-species-list-scopes
• nimmo-split-up-pattern-search-tests
• nimmo-standardize-pass_query_params
• nimmo-stimulus-connected
• nimmo-switch-pattern-search-select-plural
• nimmo-system-extensions
• nimmo-system-test-class-selector-adjustments
• nimmo-test-coverage-cn-hr-forms
• nimmo-thread-safety
• nimmo-touch-obs-on-image-transferred
• nimmo-truncated-full-captions
• nimmo-try-single-image-detach-route
• nimmo-turbo-rails-2
• nimmo-turbo-update-naming-vote-tally
• nimmo-update-bundle-3-21-24
• nimmo-update-strip_checkpoint
• nimmo-user-current-vote-naming
• nimmo-user-nostats
• nimmo-user-show-page
• nimmo-user-stats-table
• nimmo-users-show
• nimmo-validation-refactor
• nimmo-version-tables
• nimmo-version-usernames
• nimmo-versions-ivar
• nimmo-view-component
• nimmo-views-folder
• nimmolo-patch-1
• njw-1955-test-fix
• njw-2024-10-08-en.txt
• njw-abc-fix
• njw-account-deletion-text
• njw-actions-for-project-lists
• njw-add-code-index
• njw-add-from-search-status
• njw-add-obs-to-project
• njw-advanced-search-user-fix
• njw-allow-collectors-to-edit
• njw-another-job-tweak
• njw-api-formatting
• njw-api2-code
• njw-api2-comment
• njw-arel-warnings
• njw-avoid-n+1-on-obs-index
• njw-avoid-namings-without-names
• njw-banner-cleanup
• njw-better-banners
• njw-blank-field-slip-collector
• njw-bulk-rename
• njw-bundle-update-2024-03-08
• njw-bundle-update-20250508
• njw-cable-migration-fixes
• njw-cable-migration-tweak
• njw-cache-production-doc
• njw-change-field-slip-id
• njw-checklist-changes
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Build # 11962926543

Build Type

Pull #2544

github

Committed by JoeCohen

Commit Message

Use core_nt for BLAST

- Uses `core_nt` database instead of `nt` for BLAST search urls.
- Should give fasater & better BLAST results.
See https://mushroomobserver.slack.com/archives/C040TH9FV/p1732117497825869
- Trivial refactor of `blast_url` to better separate concerns

Pull Request Pull Request #2544: Use core_nt for BLAST

Run Details

5 of 5 new or added lines in 1 file covered. (100.0%)

27224 of 29120 relevant lines covered (93.49%)

580.93 hits per line